Tools
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Proteins 21654
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Sites 70536
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Organisms 12
Prediction Tools (External)
This part collects some online prediction tools, you could employ them to predict own data.
Details
| Tools | CysPTM type | Data set (positive samples and negative samples) | Feature encoding | Algorithm | PMID |
|---|---|---|---|---|---|
| iSulf-Cys | S-sulfenylation | 900/6856 | One-hot, The position-specific amino acid propensity (PSAAP), AAindex | Support Vector Machine (SVM) | 27104833 |
| SulCysSite | S-sulfenylation | 1027/8023 | AAindex, One-hot, Position specific scoring matrix (PSSM), Profile-based composition of amino acid pairs (pCKSAAP) | Random Forest (RF) | 28990628 |
| iPreny-PseAAC | S-prenylation | 94/456 | Pseudo amino acid composition (PseAAC) | Support Vector Machine (SVM) | 28425870 |
| SIMLIN | S-sulfenylation | 1235/9349 | Amino acid composition (AAC), The composition of k-spaced amino acid pairs (CKSAAP), BLOSUM62, Position specific scoring matrix (PSSM), AAindex, One-hot, Predicted surface accessibility (ACC), Predicted protein disordered region, Predicted protein secondary structure | Random Forest (RF) , Support Vector Machine (SVM) | 31752668 |
| PreSNO | S-nitrosylation | 3383/17165 | CPA, SAC, TCP, PPA | Random Forest (RF) , Support Vector Machine (SVM) | 31710075 |
| DeepCSO | S-sulfenylation | 1535/8819 | Word-Embeding | Long short-term memory (LSTM) | 33335901 |
| DeepGSH | S-glutathionylation | 3645/3645 | The composition of k-spaced amino acid pairs (CKSAAP), One-hot, Position specific scoring matrix (PSSM) and Amino acid composition (AAC) | Deep neural network (DNN) | 32234550 |
| GPS- Palm | S-palmitoylation | 3098/18992 | Group-based prediction system (GPS), Pseudo amino acid composition (PseAAC), The composition of k-spaced amino acid pairs (CKSAAP), Orthogonal binary coding (OBC), AAindex, Autocorrelation functions (ACF), Position specific scoring matrix (PSSM), Accessible surface area (ASA), Secondary structure (SS) and Backbone torsion angles (BTA) | Convolutional neural network (CNN) | 32248222 |
| pCysMod | S-nitrosylation, S-palmitoylation, S-persulfidation, S-sulfenylation and S-sulfinylation | SNO: 10784/19335, S-Palm: 748/2766, S-OH: 2587/4746, S-SG: 2010/2535, S-O2H: 440/655 | One-hot, Amino acid composition (AAC), The composition of k-spaced amino acid pairs (CKSAAP), Position specific scoring matrix (PSSM) | Deep neural network (DNN) | 33732693 |
| Mul-SNO | S-nitrosylation | 13894/11374 | BERT, BiLSTM | Random Forest (RF), LightGBM (LGB), XGBoost (XGB) | 34762593 |
Contact Us
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Author: Y. Meng, L. Zhang, et al.
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